GSM1151694: GATA6 ChIP-seq; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
GATA6
Cell type
Cell type Class
Pancreas
Cell type
PA-TU-8988S
Primary Tissue
Pancreas
Tissue Diagnosis
Adenocarcinoma
Attributes by original data submitter
Sample
source_name
PaTu8988S
cell line
PaTu8988S
cell type
pancreatic ductal adenocarcinoma
chip antibody
anti hGATA6 R&D AF1700
chip antibody manufacturer
R&D
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were lysed in 0.5% SDS, lysates were sonicated and clarified. Chromatin was diluted 5 fold and incubated with beads for pre-clearing. After pre-clearing, chromatin was incubated o/n with anti-GATA6 antibody. DNA samples were provided by the user. Input sample corresponds to a balanced blend of the inputs from the three individual samples. Both 20ng of input pool and 6ng of individual sample DNA, as quantitated by fluorometry, were resolved by electrophoresis and fractions of 50-250bp were taken. 1-3 ng of DNA fraction per sample was processed through subsequent enzymatic treatments of end-repair, dA-tailing, and ligation to adapters as in Illumina's "TruSeq DNA Sample Preparation Guide" (part # 15005180 Rev. C). Adapter-ligated libraries were completed by limited-cycle PCR with Illumina PE primers (13 cycles). The resulting purified DNA library was applied to an Illumina flow cell for cluster generation (TruSeq cluster generation kit v5) and sequenced on the Genome Analyzer IIx with SBS TruSeq v5 reagents by following manufacturer's protocols.