Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Embryonic fibroblast
Cell type
3T3-L1
Tissue
Embryo
Cell Type
Fibroblast

Attributes by original data submitter

Sample

source_name
3T3_L1
cell line
3T3-L1
genotype/variation
control
chip antibody
Pol2 (ac-055-100-adgenode mouse)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The experiments were performed as previously described (Cardamone et al, Cell Reports 2014) The library construction protocol followed the manufacturer’s instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
21318056
Reads aligned (%)
81.8
Duplicates removed (%)
48.7
Number of peaks
2730 (qval < 1E-05)

mm9

Number of total reads
21318056
Reads aligned (%)
81.7
Duplicates removed (%)
48.8
Number of peaks
2761 (qval < 1E-05)

Base call quality data from DBCLS SRA