Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Brain
MeSH Description
The part of CENTRAL NERVOUS SYSTEM that is contained within the skull (CRANIUM). Arising from the NEURAL TUBE, the embryonic brain is comprised of three major parts including PROSENCEPHALON (the forebrain); MESENCEPHALON (the midbrain); and RHOMBENCEPHALON (the hindbrain). The developed brain consists of CEREBRUM; CEREBELLUM; and other structures in the BRAIN STEM.

Attributes by original data submitter

Sample

strain
C57BL/6
age
12 months
sex
male
tissue
brain
sample_type
Tissue chunk
IP
H3
sample
10

Sequenced DNA Library

library_name
Cerebellum_12m2_H3_TGACCA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
37012503
Reads aligned (%)
98.6
Duplicates removed (%)
24.5
Number of peaks
407 (qval < 1E-05)

mm9

Number of total reads
37012503
Reads aligned (%)
98.4
Duplicates removed (%)
24.6
Number of peaks
401 (qval < 1E-05)

Base call quality data from DBCLS SRA