Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

strain
C57BL/6
age
29 months
sex
male
tissue
liver
sample_type
Tissue chunk
IP
H3
sample
31

Sequenced DNA Library

library_name
Liver_29m1_H3_ACAGTG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
37383043
Reads aligned (%)
95.8
Duplicates removed (%)
17.2
Number of peaks
539 (qval < 1E-05)

mm9

Number of total reads
37383043
Reads aligned (%)
95.7
Duplicates removed (%)
17.2
Number of peaks
486 (qval < 1E-05)

Base call quality data from DBCLS SRA