SRX2873883
H3K27ac ChIP-seq of homo sapiens: HepG2 cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

isolate
Monoisolate
age
P37
biomaterial_provider
Ahituv
sex
not applicable
tissue
Liver
cell_line
HepG2

Sequenced DNA Library

library_name
ACAGTGGT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
65349983
Reads aligned (%)
88.1
Duplicates removed (%)
37.9
Number of peaks
12498 (qval < 1E-05)

hg19

Number of total reads
65349983
Reads aligned (%)
87.4
Duplicates removed (%)
39.3
Number of peaks
12321 (qval < 1E-05)

Base call quality data from DBCLS SRA