Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tfap2a

Cell type

Cell type Class
Gonad
Cell type
Epididymis
MeSH Description
The convoluted cordlike structure attached to the posterior of the TESTIS. Epididymis consists of the head (caput), the body (corpus), and the tail (cauda). A network of ducts leaving the testis joins into a common epididymal tubule proper which provides the transport, storage, and maturation of SPERMATOZOA.

Attributes by original data submitter

Sample

source_name
AP2a_Intact_rep2
strain
wild type ICR
tissue
caput epididymis
age
8-12 weeks old
treatment
intact
chip antibody
AP2a (ab52222, Abcam)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
41497439
Reads aligned (%)
90.2
Duplicates removed (%)
16.5
Number of peaks
18537 (qval < 1E-05)

mm9

Number of total reads
41497439
Reads aligned (%)
90.1
Duplicates removed (%)
16.6
Number of peaks
18583 (qval < 1E-05)

Base call quality data from DBCLS SRA