Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
HOXB7
Cell type Class
Breast
Cell type
BT-474

Cell type information


Primary Tissue
Breast
Site of Extraction
Soft Tissue
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by Original Data Submitter


source_name
BT-474 cells
cell type
Breast cancer cells derived from ductal carcinoma
passages
13-23
chip antibody
HOXB7 (H0291, Sigma-Aldrich)

Metadata from Sequence Read Archive

Library Description


library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Platform Information


instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

External Database Query

Logs in read processing pipeline


Number of total reads
24387227
Reads aligned (%)
83.3
Duplicates removed (%)
2.9
Number of peaks
527 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA