Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Neural
Cell type
Hippocampal CA neurons
NA
NA

Attributes by original data submitter

Sample

source_name
Hippocampal CA neurons
strain
C57BL/6J
tissue
Hippocampal CA neurons
age
4-6 month-old (adult)
Sex
male
chip antibody
H3K4me3 (Abcam ab8580)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
31411863
Reads aligned (%)
92.4
Duplicates removed (%)
67.4
Number of peaks
9943 (qval < 1E-05)

mm9

Number of total reads
31411863
Reads aligned (%)
92.1
Duplicates removed (%)
67.6
Number of peaks
10021 (qval < 1E-05)

Base call quality data from DBCLS SRA