SRX2845350
Raw reads of Input Prdm16 SVZ p4 3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Neural
Cell type
Subventricular zone
NA
NA

Attributes by original data submitter

Sample

strain
C57Bl/Ka
age
postnatal day 4
sex
unknown
tissue
subventricular zone of the brain
sample_type
Input_Prdm16_SVZ_p4_3

Sequenced DNA Library

library_name
Input_Prdm16_SVZ_p4_3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38751697
Reads aligned (%)
98.4
Duplicates removed (%)
13.8
Number of peaks
282 (qval < 1E-05)

mm9

Number of total reads
38751697
Reads aligned (%)
98.2
Duplicates removed (%)
13.8
Number of peaks
321 (qval < 1E-05)

Base call quality data from DBCLS SRA