SRX2845075
TTC1240 empty anti-BAF200 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Kidney
Cell type
TTC1240
NA
NA

Attributes by original data submitter

Sample

source_name
TTC1240 (MRT)
cell line
TTC1240
tissue
Malignant rhabdoid tumor

Sequenced DNA Library

library_name
TTC1240_empty_BAF200
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29928800
Reads aligned (%)
96.7
Duplicates removed (%)
27.6
Number of peaks
15818 (qval < 1E-05)

hg19

Number of total reads
29928800
Reads aligned (%)
96.2
Duplicates removed (%)
28.0
Number of peaks
15764 (qval < 1E-05)

Base call quality data from DBCLS SRA