SRX2841184
GSM2634761: U87 H3K4Me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
U87-MG
cell line
U87 GBM
treatment
Mock
treatment_duration_in_hours
Not Applicable

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
52222489
Reads aligned (%)
98.8
Duplicates removed (%)
33.8
Number of peaks
41821 (qval < 1E-05)

hg19

Number of total reads
52222489
Reads aligned (%)
98.7
Duplicates removed (%)
34.1
Number of peaks
41639 (qval < 1E-05)

Base call quality data from DBCLS SRA