SRX2841183
GSM2634760: U87 H3K27Ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
U87-MG
cell line
U87 GBM
treatment
Mock
treatment_duration_in_hours
Not Applicable

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
46882454
Reads aligned (%)
99.3
Duplicates removed (%)
29.5
Number of peaks
63627 (qval < 1E-05)

hg19

Number of total reads
46882454
Reads aligned (%)
99.2
Duplicates removed (%)
29.7
Number of peaks
63490 (qval < 1E-05)

Base call quality data from DBCLS SRA