SRX2841180
GSM2634757: U87 BRD4 dBET6 500nM 24h; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
U87-MG
cell line
U87 GBM
treatment
dBET6
treatment_duration_in_hours
24

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Standard Illumina library preparation protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57710443
Reads aligned (%)
96.6
Duplicates removed (%)
9.8
Number of peaks
1548 (qval < 1E-05)

hg19

Number of total reads
57710443
Reads aligned (%)
95.6
Duplicates removed (%)
11.6
Number of peaks
1497 (qval < 1E-05)

Base call quality data from DBCLS SRA