Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mES
cell type
embryonic stem cell
strain
J1
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin of cross-linked mESCs with H3.1WT overexpressing were sonicated into near 500bp length, the chromatin solution were captured by 2ug of rabbit polyclonal anti-H3K36me3 antibody (Abclonal, Cat.#A2366, lot# 40648) The ChIP DNAs were measured with the Qubit 2.0 fluorometer dsDNA HS Assay (Thermo Fisher Scientific). The libraries were prepared using NEBNext Ultra™ DNA Library Prep Kit for Illumina (NEB, #E7370) according to the manual instruction.

Sequencing Platform

instrument_model
HiSeq X Ten

mm10

Number of total reads
26509917
Reads aligned (%)
66.9
Duplicates removed (%)
44.4
Number of peaks
1114 (qval < 1E-05)

mm9

Number of total reads
26509917
Reads aligned (%)
66.8
Duplicates removed (%)
44.2
Number of peaks
1033 (qval < 1E-05)

Base call quality data from DBCLS SRA