SRX2836998
GSM2633486: input DNA C2C12 D3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myoblast cell
cell type
C2C12 myoblast cell line
stage of adipogenesis or myogenesis
Differentiated myocytes

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
9503319
Reads aligned (%)
55.9
Duplicates removed (%)
5.0
Number of peaks
54 (qval < 1E-05)

mm9

Number of total reads
9503319
Reads aligned (%)
55.8
Duplicates removed (%)
5.0
Number of peaks
50 (qval < 1E-05)

Base call quality data from DBCLS SRA