Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Adipocyte
Cell type
Brown preadipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Brown preadipocyte cell
cell type
immortalized Pparg-flox/flox brown preadipocytes
stage of adipogenesis or myogenesis
Confluent preadipocytes (D0)
strain
C57BL/6J

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
48761184
Reads aligned (%)
84.3
Duplicates removed (%)
56.7
Number of peaks
31002 (qval < 1E-05)

mm9

Number of total reads
48761184
Reads aligned (%)
84.1
Duplicates removed (%)
56.8
Number of peaks
30988 (qval < 1E-05)

Base call quality data from DBCLS SRA