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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Brd4
wikigenes
PDBj
CellType: Brown preadipocytes
ATCC
MeSH
RIKEN BRC
SRX2836988
GSM2633476: Brd4 ChIPSeq D2 MLL3 MLL4 dKO; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Brd4
Cell type
Cell type Class
Adipocyte
Cell type
Brown preadipocytes
NA
NA
Attributes by original data submitter
Sample
source_name
Brown preadipocyte cell
cell type
immortalized Mll3-/-; Mll4f/f brown preadipocytes
stage of adipogenesis or myogenesis
Immature adipocytes (D2)
strain
C57BL/6J
chip antibody
Brd4 (Bethyl, A301-985A100, lot 3)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody.
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
35093995
Reads aligned (%)
85.1
Duplicates removed (%)
21.7
Number of peaks
1906 (qval < 1E-05)
mm9
Number of total reads
35093995
Reads aligned (%)
84.7
Duplicates removed (%)
21.6
Number of peaks
1912 (qval < 1E-05)
Base call quality data from
DBCLS SRA