Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Brd4

Cell type

Cell type Class
Adipocyte
Cell type
Brown preadipocytes
NA
NA

Attributes by original data submitter

Sample

source_name
Brown preadipocyte cell
cell type
immortalized Pparg-flox/flox brown preadipocytes
stage of adipogenesis or myogenesis
Immature adipocytes (D2)
strain
C57BL/6J
chip antibody
Brd4 (Bethyl, A301-985A100, lot 3)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
18027377
Reads aligned (%)
82.0
Duplicates removed (%)
18.0
Number of peaks
10704 (qval < 1E-05)

mm9

Number of total reads
18027377
Reads aligned (%)
81.8
Duplicates removed (%)
18.1
Number of peaks
11158 (qval < 1E-05)

Base call quality data from DBCLS SRA