Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

source_name
mouse embryonic fibroblast cells E13.5
cell type
MEF expressing OKSM for 4 days
passages
1
genotype
shUbc9

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
For ATAC-seq: according to Buenrostro et al., Nature Methods, 2013. 30min treatment with Tn5 nuclease on isolated nuclei. Experiments were done in triplicates. Elute transposed DNA was PCR-amplified using barcode primers and purified using PCR Cleanup kit (QIAGEN)

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
64566746
Reads aligned (%)
46.3
Duplicates removed (%)
24.5
Number of peaks
800 (qval < 1E-05)

mm9

Number of total reads
64566746
Reads aligned (%)
46.2
Duplicates removed (%)
24.5
Number of peaks
769 (qval < 1E-05)

Base call quality data from DBCLS SRA