Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Erf

Cell type

Cell type Class
Prostate
Cell type
Prostate organoids
NA
NA

Attributes by original data submitter

Sample

source_name
normal murine prostate organoids
tissue
normal murine prostate organoids
doxycycline
+
chip antibody
anti-ERF (PA5-30237)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody DNA libraries were prepared for sequencing using standard Illumina protocols by MSKCC Integrated Genomics Operation core

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
21456336
Reads aligned (%)
91.2
Duplicates removed (%)
3.8
Number of peaks
5038 (qval < 1E-05)

mm9

Number of total reads
21456336
Reads aligned (%)
91.0
Duplicates removed (%)
4.2
Number of peaks
5016 (qval < 1E-05)

Base call quality data from DBCLS SRA