Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
Mutu
NA
NA

Attributes by original data submitter

Sample

source_name
MutuI (EBV+ Burkitt lymphoma cell line)
cell line
MutuI
pathogen
Epstein-Barr virus
chip antibody
BRD4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Unless noted, 18E6 cells were collected for ChIP. For the Mutu cells treated with JQ1 or vehicle, 100E6 cells were collected for ChIP. DNA was prepared and ChIP performed as described in the paper ChIP-seq libraries were prepared as described in the paper

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
81653299
Reads aligned (%)
85.5
Duplicates removed (%)
11.5
Number of peaks
10719 (qval < 1E-05)

hg38

Number of total reads
81653299
Reads aligned (%)
87.4
Duplicates removed (%)
10.9
Number of peaks
10384 (qval < 1E-05)

Base call quality data from DBCLS SRA