Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal villus
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse intestinal villus epithelial cells
strain
B6; 129 mixed background
cell type
Adult differentiated jejunal epithelial cells; middle 1/3 of intestine
genotype
Cdx2f/f
protocol
Villi from middle 1/3rd (jejunum) of mouse small intestine were isolated by incubating in 5mM EDTA in PBS for 45 minutes at 4°C. Cells were immediately snap-frozen in liquid nitrogen for subsequent ChIP analysis.

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
29698228
Reads aligned (%)
98.6
Duplicates removed (%)
26.0
Number of peaks
69510 (qval < 1E-05)

mm9

Number of total reads
29698228
Reads aligned (%)
98.5
Duplicates removed (%)
26.0
Number of peaks
69488 (qval < 1E-05)

Base call quality data from DBCLS SRA