SRX2793154
GSM2610561: KO1; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Pre-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
BCR-ABL1 transformed p19 null preB-ALL
strain
C57BL/6J
cell type
pre-B cell leukemia
genotype
BCR-ABL1 overexpressed p19 null PHF6 null

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
500,000 nuclei were lysed and transposed with the Nextera DNA library preparation kit (Illumina).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
101170173
Reads aligned (%)
98.6
Duplicates removed (%)
30.6
Number of peaks
25862 (qval < 1E-05)

mm9

Number of total reads
101170173
Reads aligned (%)
98.5
Duplicates removed (%)
30.9
Number of peaks
25875 (qval < 1E-05)

Base call quality data from DBCLS SRA