SRX2789666
GSM2608047: ATAC CLP rep3; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Common lymphoid progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
ATAC_CLP_rep3
strain
C57BL/6
tissue
Bone marrow
cell type
CLP
antibodies
None

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Illumina Nextra DNA prep kit (Part# FC-121-1030)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
131253250
Reads aligned (%)
94.0
Duplicates removed (%)
82.5
Number of peaks
38223 (qval < 1E-05)

mm9

Number of total reads
131253250
Reads aligned (%)
93.8
Duplicates removed (%)
82.5
Number of peaks
38136 (qval < 1E-05)

Base call quality data from DBCLS SRA