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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: Common lymphoid progenitor
ATCC
MeSH
RIKEN BRC
SRX2789665
GSM2608046: ATAC CLP rep2; Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Blood
Cell type
Common lymphoid progenitor
NA
NA
Attributes by original data submitter
Sample
source_name
ATAC_CLP_rep2
strain
C57BL/6
tissue
Bone marrow
cell type
CLP
antibodies
None
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Illumina Nextra DNA prep kit (Part# FC-121-1030)
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
136854241
Reads aligned (%)
93.8
Duplicates removed (%)
81.9
Number of peaks
40533 (qval < 1E-05)
mm9
Number of total reads
136854241
Reads aligned (%)
93.7
Duplicates removed (%)
81.9
Number of peaks
40495 (qval < 1E-05)
Base call quality data from
DBCLS SRA