SRX2789127
GSM2607720: ATACseq Hdac3KO rep1; Drosophila melanogaster; Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
B220+CD43+ B cells
strain
C57BL/6
tissue
bone marrow
cell type
B220+CD43+ B cells
genotype
HDAC3 KO

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
purification of transposase-treated DNA by Zymo Research DNA clean and concentrator Tn5-mediated fragmentation and adapter insertion

Sequencing Platform

instrument_model
Illumina HiSeq 3000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
27444029
Reads aligned (%)
8.5
Duplicates removed (%)
26.4
Number of peaks
855 (qval < 1E-05)

dm3

Number of total reads
27444029
Reads aligned (%)
8.5
Duplicates removed (%)
20.5
Number of peaks
958 (qval < 1E-05)

Base call quality data from DBCLS SRA