Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Suz12

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E14 ES cells
cell type
E14 ES cells
chip antibody
SUZ12, Cell Signaling, D39F6
genotype
Rescue Wildtye

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Genomic DNA were extracted using antibodies for MTF2, SUZ12, H3K27me3. RNA-Seq samples were prepared by isolating total RNA using Trizol, mRNA Isolation using Oligo-dT-coupled beads, heat fractionation, reverse transcription and second strand synthesis. Libraries were constructed of 10-50 ng of DNA following Illumina’s® protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
28342821
Reads aligned (%)
68.6
Duplicates removed (%)
16.1
Number of peaks
671 (qval < 1E-05)

mm9

Number of total reads
28342821
Reads aligned (%)
68.5
Duplicates removed (%)
16.2
Number of peaks
674 (qval < 1E-05)

Base call quality data from DBCLS SRA