Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse ES cell line E14Tg2A
cell type
mouse embryonic stem cell line
cell line
E14Tg2A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Treated cells were fixed, harvested, and lysed, then submitted to sonication. The sonicated DNA was incubated with specific beads-conjugated antibody overnight. Then the beads were washed, and DNA was eluted, and quantified. The sequencing library was generatedusing Nextera XT DNA preparation Kit

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
19189689
Reads aligned (%)
77.8
Duplicates removed (%)
56.0
Number of peaks
3187 (qval < 1E-05)

mm9

Number of total reads
19189689
Reads aligned (%)
77.2
Duplicates removed (%)
57.0
Number of peaks
3059 (qval < 1E-05)

Base call quality data from DBCLS SRA