Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPSC
cell type
iPSC
treatment
induced pluripotant stem cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq: Eight ATAC libraries were prepared: iPSCs, TSCs, MEFs, and MEFS at three days of reprogramming by OSKM, GETM, GTMS or GETMS. ATAC-seq: Library preparation was performed as previously described (Buenrostro et al., 2016). Libraries were subjected to paired-end sequencing using Illumina Next-Seq 500 platform.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
2930235
Reads aligned (%)
97.5
Duplicates removed (%)
12.1
Number of peaks
84 (qval < 1E-05)

mm9

Number of total reads
2930235
Reads aligned (%)
97.3
Duplicates removed (%)
12.3
Number of peaks
80 (qval < 1E-05)

Base call quality data from DBCLS SRA