Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
EpH4 1424
Tissue
Breast (Mammary Gland)
Cell Type
Epithelial
Disease
Breast Cancer

Attributes by original data submitter

Sample

source_name
Eph4 Cell Line
cell type
Established Cell Line
cell line
Eph4
strain
BALB/c
gender
female

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin fraction obtained from Eph4 cells or FACS-sorted mammary epithelial cells were incubated with antibodies that recognize mouse histone H3K27ac or mouse c-Myc protein. 1/10 of chromatin fraction was saved as Input. Chromatin-antibody were isolated with magnetic beads. DNA purified with ChIP DNA kit (Zymo) according the manufacturer's instruction ChIP library samples were amplified and barcoded using Clontech DNA Smart Chipseq kit and Clontech Indexing set in accordance with the manufacturer’s instructions, then pooled for sequencing.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
35707588
Reads aligned (%)
89.0
Duplicates removed (%)
12.0
Number of peaks
43663 (qval < 1E-05)

mm9

Number of total reads
35707588
Reads aligned (%)
88.8
Duplicates removed (%)
11.9
Number of peaks
43622 (qval < 1E-05)

Base call quality data from DBCLS SRA