Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Breast
Cell type
Mammary epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
BptfWT Mammary Cells
gender
female
tissue
Mammary Gland
compartment
Basal
cell type
Basal Mammary Epithelial Cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nuclei obtained from Eph4 cells or FACS-sorted mammary epithelial cells were incubated with reagents from Illumina Nextera kit (Illumina), following DNA purification with purified with DNA Clean-up & Concentration kit (Zymo) according the manufacturer's instruction Nextera treated, purified DNA was amplified and barcoded using previously described protocol (Buenrostro e at, 2013), then pooled for sequencing.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
75644866
Reads aligned (%)
84.0
Duplicates removed (%)
45.6
Number of peaks
57143 (qval < 1E-05)

mm9

Number of total reads
75644866
Reads aligned (%)
83.9
Duplicates removed (%)
45.6
Number of peaks
57118 (qval < 1E-05)

Base call quality data from DBCLS SRA