SRX2747184
GSM2584743: GT ATAC; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
human ES cells
strain
H1 ES differentiate

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Genomic DNA was isolated using Qiagen DNeasy Blood and Tissue kit. ATAC-seq library preparation was performed as described in Nat Methods. 2013;10(12):1213-8

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25346269
Reads aligned (%)
60.7
Duplicates removed (%)
16.2
Number of peaks
2497 (qval < 1E-05)

hg19

Number of total reads
25346269
Reads aligned (%)
60.3
Duplicates removed (%)
16.4
Number of peaks
2413 (qval < 1E-05)

Base call quality data from DBCLS SRA