SRX2744960
GSM2582383: Input of ChIPseq for HP1g (Cbx3) in Cbx1 knock-out mES cells, rep2; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
embryonic stem cells, input
cell type
embryonic stem (ES) cells
genetic background
hybrid 129-C57BL/6
genotype/variation
Cbx3 FlagAvi, Cbx1 KO
treatment
none
chip antibody
none

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
53364441
Reads aligned (%)
96.1
Duplicates removed (%)
13.0
Number of peaks
601 (qval < 1E-05)

mm9

Number of total reads
53364441
Reads aligned (%)
95.9
Duplicates removed (%)
13.0
Number of peaks
684 (qval < 1E-05)

Base call quality data from DBCLS SRA