Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
age
8-10 weeks
sex
male
tissue
Lymph node, CD4+
genotype
Bcl11b[fl/fl]-CreERT2
growth_protocol
Th2 cell culture: Na•ve CD4 T cells (CD4+CD44lowCD62LhighCD25-) were purified from lymph node. Cells cultured in RPMI medium 1640 (Invitrogen) supplemented with 10% FBS (Hyclone), 200 mM Glutamine, 100 mM Sodium pyruvate (Gibco), 50__M __-mercaptoethanol (Sigma), 100 U/ml penicillin and 100 _g/ml streptomycin at 37_¡C in a humidified atmosphere of 5% CO2. a-IFN-g 10_g/ml, a-IL-12 10_g/ml, IL-4 5000U/ml. Na•ve CD4 T cells from Bcl11bfl/fl-CreERT2 mice cultured under Th2 conditions without 4-OHT for 4 days, 1 day resting, then an additional 4 days of Th2 conditions without 4-OHT
sample_type
cell culture

Sequenced DNA Library

library_name
Th2_WT_Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
35272582
Reads aligned (%)
80.9
Duplicates removed (%)
15.6
Number of peaks
468 (qval < 1E-05)

mm9

Number of total reads
35272582
Reads aligned (%)
80.8
Duplicates removed (%)
15.7
Number of peaks
483 (qval < 1E-05)

Base call quality data from DBCLS SRA