Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Granulocytic-monocytic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
WD_PBS
cell type
GMP
genotype
Ldlr-/-
stimulation
PBS
diet
WD

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
For ATAC-sequencing, 50.000 flow sorted HSPCs, CMPs and GMPs were collected in ice-cold HBSS containing 0.1%BSA and 2mM EDTA, and immediately processed following the protocol of Buenrosto, Greenleaf et al., Curr. Protoc. Mol. Biol., 2015 library preparation has been performed as described in the protocol of Buenrosto, Greenleaf et al., Curr. Protoc. Mol. Biol., 2015

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
15046156
Reads aligned (%)
90.3
Duplicates removed (%)
25.0
Number of peaks
22958 (qval < 1E-05)

mm9

Number of total reads
15046156
Reads aligned (%)
90.2
Duplicates removed (%)
25.0
Number of peaks
22951 (qval < 1E-05)

Base call quality data from DBCLS SRA