Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Biotin

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
murine primary activated B cells
experiment type
ChIP-Seq
chip antibody
Streptavidin beads
chip antibody manufacturer
Invitrogen
activation protocol
LPS/IL4
precipitated ctcf genotype
mZF9

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
35195563
Reads aligned (%)
35.7
Duplicates removed (%)
19.9
Number of peaks
16043 (qval < 1E-05)

mm9

Number of total reads
35195563
Reads aligned (%)
35.7
Duplicates removed (%)
20.0
Number of peaks
16034 (qval < 1E-05)

Base call quality data from DBCLS SRA