Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Lung
Cell type
MRC-5
Tissue
Lung
Cell Type
Fetal
Disease
Normal

Attributes by original data submitter

Sample

source_name
MRC5 Day 5 after OSK rep1
chip antibody
Sox2 (R&D Systems AF2018)
cell line
MRC5 fibroblast
protocol
Oct4, Sox2 and Klf4 addition
time
5 days
passage
8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg19

Number of total reads
13013490
Reads aligned (%)
147.8
Duplicates removed (%)
13.3
Number of peaks
297 (qval < 1E-05)

hg38

Number of total reads
13013490
Reads aligned (%)
150.6
Duplicates removed (%)
13.2
Number of peaks
295 (qval < 1E-05)

Base call quality data from DBCLS SRA