SRX2732200
GSM2573025: OSK rep1 H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
MRC-5
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
MRC5 Day 5 after OSK rep1
chip antibody
H3K4me3 (Abcam ab8580 Lot: GR240214-2)
cell line
MRC5 fibroblast
protocol
Oct4, Sox2 and Klf4 addition
time
5 days
passage
8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
See ChIP-Endo Protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
7307024
Reads aligned (%)
92.1
Duplicates removed (%)
2.8
Number of peaks
3495 (qval < 1E-05)

hg19

Number of total reads
7307024
Reads aligned (%)
90.8
Duplicates removed (%)
2.8
Number of peaks
3445 (qval < 1E-05)

Base call quality data from DBCLS SRA