SRX2719729
ChIP seq for Zbtb7a of Mus musculus: control 3T3 fibroblasts +TNF-a

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
wild-type
dev_stage
embryo
sex
female
tissue
fibroblast
cell_line
3T3 'Beg'
cell_type
fibroblast
treatment
5ng/ml mouse TNF-alpha, 2hr

Sequenced DNA Library

library_name
Lib_A132_8_R1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
24842655
Reads aligned (%)
95.4
Duplicates removed (%)
12.5
Number of peaks
328 (qval < 1E-05)

mm9

Number of total reads
24842655
Reads aligned (%)
95.2
Duplicates removed (%)
12.5
Number of peaks
307 (qval < 1E-05)

Base call quality data from DBCLS SRA