Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Adult
Cell type
Adult body

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
whole flies
cell type
whole flies
age of flies
5 day old
chip antibody
None
diet
Galactose fed

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody using Easy Magna Chip kit (Catalog # 17¬10085 & # 17¬10086, Millipore Sequencing libraries were generated using library Preparation Kit (NEB) following manufacturer’s recommendations and index codes were added to each sample. Briefly, the DNA sample was fragmented by sonication to a size of 75~100bp, and then DNA fragments were end polished, A-tailed, and ligated with the full-length adapter for Illumina sequencing with further PCR amplification.

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
87596775
Reads aligned (%)
79.8
Duplicates removed (%)
65.5
Number of peaks
19649 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA