Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Adult body
NA
NA

Attributes by original data submitter

Sample

source_name
whole flies
cell type
whole flies
age of flies
5 day old
chip antibody
None
diet
Glucose fed

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody using Easy Magna Chip kit (Catalog # 17¬10085 & # 17¬10086, Millipore Sequencing libraries were generated using library Preparation Kit (NEB) following manufacturer’s recommendations and index codes were added to each sample. Briefly, the DNA sample was fragmented by sonication to a size of 75~100bp, and then DNA fragments were end polished, A-tailed, and ligated with the full-length adapter for Illumina sequencing with further PCR amplification.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm6

Number of total reads
70730310
Reads aligned (%)
79.0
Duplicates removed (%)
58.4
Number of peaks
6008 (qval < 1E-05)

dm3

Number of total reads
70730310
Reads aligned (%)
81.0
Duplicates removed (%)
53.0
Number of peaks
13851 (qval < 1E-05)

Base call quality data from DBCLS SRA