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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: HMBOX1
wikigenes
PDBj
CellType: WI-38
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX268884
GSM1126876: HMBOX1 ChIPseq VA13; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
HMBOX1
Cell type
Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
WI-38 VA13 ALT (+) cells, HMBOX1 ChIP
cell line
WI-38
alt status
+
chip antibody
anti-HMBOX1 / Rabbit polyclonal IgG (Abcam ab97643)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared by Fasteris SA (Switzerland) and were sequenced on HiSeq 2000.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
27643358
Reads aligned (%)
68.5
Duplicates removed (%)
4.4
Number of peaks
1478 (qval < 1E-05)
hg19
Number of total reads
27643358
Reads aligned (%)
67.9
Duplicates removed (%)
5.8
Number of peaks
1433 (qval < 1E-05)
Base call quality data from
DBCLS SRA