Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HMBOX1

Cell type

Cell type Class
Lung
Cell type
WI-38
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
WI-38 VA13 ALT (+) cells, HMBOX1 ChIP
cell line
WI-38
alt status
+
chip antibody
anti-HMBOX1 / Rabbit polyclonal IgG (Abcam ab97643)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
27643358
Reads aligned (%)
68.5
Duplicates removed (%)
4.4
Number of peaks
1478 (qval < 1E-05)

hg19

Number of total reads
27643358
Reads aligned (%)
67.9
Duplicates removed (%)
5.8
Number of peaks
1433 (qval < 1E-05)

Base call quality data from DBCLS SRA