SRX268300
GSM1125263: IgG ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
BT-549
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
BT549 breast cancer cells, IgG ChIP
cell line
BT549
cell type
triple negative breast cancer cells
chip antibody
normal rabbit IgG (sc-2027, Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Standard Illumina DNA library construction. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25744285
Reads aligned (%)
98.5
Duplicates removed (%)
44.2
Number of peaks
761 (qval < 1E-05)

hg19

Number of total reads
25744285
Reads aligned (%)
97.7
Duplicates removed (%)
45.9
Number of peaks
870 (qval < 1E-05)

Base call quality data from DBCLS SRA