SRX268271
GSM1124006: Input Afos (Dex + E2); Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
7438
NA
NA

Attributes by original data submitter

Sample

source_name
7438 cells + Afos
cell type
mouse mammary cells (express GFP-GR, Cherry-ER, and Afos under a tet regulated promoter)
treatment
Dexamethasone + Estradiol for 30 minutes
cell line
7438 cells
replicate
replicate 1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and GR-DNA complexes or ER-DNA complexes were isolated with antibody

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
41483114
Reads aligned (%)
96.8
Duplicates removed (%)
16.2
Number of peaks
523 (qval < 1E-05)

mm9

Number of total reads
41483114
Reads aligned (%)
96.5
Duplicates removed (%)
16.2
Number of peaks
624 (qval < 1E-05)

Base call quality data from DBCLS SRA