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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: 7438
ATCC
MeSH
RIKEN BRC
SRX268249
GSM1123984: Input (Dex + E2) r1; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Breast
Cell type
7438
NA
NA
Attributes by original data submitter
Sample
source_name
7438 cells
cell type
mouse mammary cells (express GFP-GR and Cherry-ER under a tet regulated promoter)
treatment
Dexamethasone + Estradiol for 30 minutes
cell line
7438 cells
replicate
replicate 1
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and GR-DNA complexes or ER-DNA complexes were isolated with antibody
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
23139517
Reads aligned (%)
94.7
Duplicates removed (%)
30.5
Number of peaks
52701 (qval < 1E-05)
mm9
Number of total reads
23139517
Reads aligned (%)
94.3
Duplicates removed (%)
30.5
Number of peaks
52827 (qval < 1E-05)
Base call quality data from
DBCLS SRA