Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
spleen + LN
strain
NOD
genotype
Flicr WT
cell type
Treg

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were isolated form 8-10 week-old NOD mice and double sorted by flow cytometry for DAPI- CD4+ TCRb+ CD25hi (top 50%) Tregs 50,000 CD4+TCRβ+CD25hi (top 50%) Tregs were sorted and lysed. After transposition and PCR, a final bead purification and selection (100–600 bp) was performed twice using 0.6× and 1.6× SPRI beads. Libraries were paired-end sequenced using a 75-bp kit on an Illumina NextSeq high-throughput sequencing system.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
97640216
Reads aligned (%)
0.0
Duplicates removed (%)
59.0
Number of peaks
29798 (qval < 1E-05)

mm9

Number of total reads
97640216
Reads aligned (%)
0.0
Duplicates removed (%)
59.1
Number of peaks
29739 (qval < 1E-05)

Base call quality data from DBCLS SRA