SRX2666889
DNase-Seq of human fibroblast

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Others
Cell type
Fibroblasts
NA
NA

Attributes by original data submitter

Sample

isolate
AG09559
age
28
biomaterial_provider
Coriell
sex
male
tissue
fibroblast

Sequenced DNA Library

library_name
hs_9559_12
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49218640
Reads aligned (%)
99.7
Duplicates removed (%)
16.8
Number of peaks
5449 (qval < 1E-05)

hg19

Number of total reads
49218640
Reads aligned (%)
99.6
Duplicates removed (%)
17.2
Number of peaks
5457 (qval < 1E-05)

Base call quality data from DBCLS SRA