SRX2666879
DNase-Seq of human fibroblast

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblast
NA
NA

Attributes by original data submitter

Sample

isolate
AG09975
age
25
biomaterial_provider
Coriell
sex
male
tissue
skin
cell_type
fibroblast

Sequenced DNA Library

library_name
hs_9975_P
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
28127621
Reads aligned (%)
99.3
Duplicates removed (%)
25.0
Number of peaks
32501 (qval < 1E-05)

hg19

Number of total reads
28127621
Reads aligned (%)
99.2
Duplicates removed (%)
25.4
Number of peaks
34530 (qval < 1E-05)

Base call quality data from DBCLS SRA