SRX266443
GSM1123950: DNase-Seq (+E2); Mus musculus; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Breast
Cell type
7438
NA
NA

Attributes by original data submitter

Sample

source_name
7438 cells
cell type
mouse mammary cells (express GFP-GR and Cherry-ER under a tet regulated promoter)
cell line
7438 cells
treatment
Estradiol for 30 minutes

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
Lysates were clarified from sonicated nuclei

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
67871123
Reads aligned (%)
97.6
Duplicates removed (%)
18.3
Number of peaks
8564 (qval < 1E-05)

mm9

Number of total reads
67871123
Reads aligned (%)
97.5
Duplicates removed (%)
18.4
Number of peaks
8464 (qval < 1E-05)

Base call quality data from DBCLS SRA