SRX2662144
GSM2546252: HMLE-TwER 125nM input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
HMLE
NA
NA

Attributes by original data submitter

Sample

source_name
HMLE-Twist-ER induced to undergo an EMT
chip antibody
none
cell type
HMLE-Twist-ER_125nM

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were sonicated to retrieve lysates and protein-DNA complexes were isolated with antibody. To make libraries, TruSeq ChIP protocol was followed.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29275272
Reads aligned (%)
98.4
Duplicates removed (%)
1.9
Number of peaks
915 (qval < 1E-05)

hg19

Number of total reads
29275272
Reads aligned (%)
97.5
Duplicates removed (%)
3.0
Number of peaks
1050 (qval < 1E-05)

Base call quality data from DBCLS SRA